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CANLab Software

Qanda
WagerlabTools Listserv
Summary: The WagerlabTools listserv supports the use and development of the tools on this page and our broader codebase.
To post a question to the listerv, email wagerlabtools@googlegroups.com.

Join the group or search the listserv archives here:
Core_image
Core Tools
Last updated: 9.17.2013
Summary: These functions are used in multiple toolboxes, and should be on your Matlab path (with subfolders) if you are using any of the other toolboxes. This version is SPM2/5 and 8 (???) compatible, and compatible with 3-D or 4-D analyze files (.img). They should also read Nifti (.nii) files as well. Not all combinations of platforms/SPM versions have been tested, so please report bugs or other problems. For additional documentation see our WIKI: http://wagerlab.colorado.edu/wiki/doku.php/help/fmri_tools_documentation
Mediation
Mediation Toolbox
Last updated: 6.3.2014
Summary: Single- and multi-level mediation search tools. For additional documentation see our WIKI: http://wagerlab.colorado.edu/wiki/doku.php/help/fmri_tools_documentation
Inverse_logit
Inverse Logit Hemodynamic Response Estimation Toolbox
Version: 1.0
Last updated: 5.26.2013
Summary: This toolbox will estimate parameters for a flexible hemodynamic response function (HRF) using three superimposed inverse logit functions. The HRF is fit using seven parameters, and can capture a variety of HRF shapes, including sustained activations. Main inputs include a data timeseries and indicator (stick) function for the onsets of events. The function can be used with ROI timeseries or incorporated into whole-brain HRF-estimation tools.
Ga_icon
Genetic Algorithm
Version: 1.1.3
Last updated: 8.14.2012
Summary: Optimize experimental design for fMRI. SPM99, SPM2, SPM5, SPM8
Robust_icon
Robust Toolbox
Version: 1.3
Last updated: 8.14.2012
Summary: Robust second-level analysis of brain imaging data - includes visualization tools, but requires SPM2/5/8 For additional documentation see our WIKI: http://wagerlab.colorado.edu/wiki/doku.php/help/fmri_tools_documentation
Nothing_important
Visualization: CANlab 3dHeadUtility
Last updated: 3.17.2014
Summary: 3-D volume visualization and movie tools (used with robust toolbox and mediation toolbox) For additional documentation see our WIKI: http://wagerlab.colorado.edu/wiki/doku.php/help/fmri_tools_documentation
Meta_icon2
Meta-analysis
Version: 1.0
Summary: Multilevel Kernel Density Analysis
Hewma_icon
Hewma
Version: 1.0 beta
Last updated: 8.14.2012
Summary: For additional documentation see our WIKI: http://wagerlab.colorado.edu/wiki/doku.php/help/fmri_tools_documentation
Bad_brain
Diagnostic Tools
Last updated: 8.14.2012
Summary: See in particular: scn_spm_design_check.m, scn_session_spike_id.m, scnlab_pca_denoise_session.m, scnlab_norm_check3.m, effect_size_map.m NOTE: Some functions may require other toolboxes! e.g., OptimizeDesign required for scn_spm_design_check.m